Using Jupyter Notebook to Build Up Your Bioinformatics Project

Upcoming Bioinformatics Workshop: Using Jupyter Notebook to Build Up Your Bioinformatics Project.

This workshop aims to introduce core principles and best practices for organising bioinformatics projects using Jupyter Notebook.

Workshop Details:

Date: 20 June 2024
Time: 11-12pm 
Location: Simon Building: Theatre A https://www.estates.manchester.ac.uk/services/centralteachingspaces/simonwayfindingroomnumbers/

Lecturer: Dr Stepan Denisov Research Associate • Division of Evolution & Genomic Sciences
Format: One hour Lecture with Q&As
Requirements: Basic Python programming and Bash scripting

Workshop Agenda:

• Introduction:
  • Core principles of bioinformatics project organisation
  • Why choose Jupyter Notebook?
• Objectives:
  • Best practices and culture of using Jupyter Notebook in bioinformatics research
• Project Organization:
  • Best practices for any computational biology project
• Jupyter Notebook vs Traditional Scripts
• Typical Bioinformatics Project with Jupyter Notebook:
  • Structure and tips
• Jupyter Notebook Bioinformatics Project Example
• Summary and Conclusion
• Useful Links
• Q&A Session

This workshop is ideal for researchers and students in the field of bioinformatics who are looking to enhance their project management skills using Jupyter Notebook. Whether you are new to Jupyter Notebook or looking to refine your skills, this session will provide valuable insights and practical tips.

Contact Information:
For any questions or further information, please contact lijing.lin@manchester.ac.uk & stepan.denisov@manchester.ac.uk

Hosted by: FBMH Bioinformatics Strategy Steering Group  & Computational Biology@Manchester Community